Figures
Abstract
The INSIG2 rs7566605 polymorphism was identified for obesity (BMI≥30 kg/m2) in one of the first genome-wide association studies, but replications were inconsistent. We collected statistics from 34 studies (n = 74,345), including general population (GP) studies, population-based studies with subjects selected for conditions related to a better health status (‘healthy population’, HP), and obesity studies (OB). We tested five hypotheses to explore potential sources of heterogeneity. The meta-analysis of 27 studies on Caucasian adults (n = 66,213) combining the different study designs did not support overall association of the CC-genotype with obesity, yielding an odds ratio (OR) of 1.05 (p-value = 0.27). The I2 measure of 41% (p-value = 0.015) indicated between-study heterogeneity. Restricting to GP studies resulted in a declined I2 measure of 11% (p-value = 0.33) and an OR of 1.10 (p-value = 0.015). Regarding the five hypotheses, our data showed (a) some difference between GP and HP studies (p-value = 0.012) and (b) an association in extreme comparisons (BMI≥32.5, 35.0, 37.5, 40.0 kg/m2 versus BMI<25 kg/m2) yielding ORs of 1.16, 1.18, 1.22, or 1.27 (p-values 0.001 to 0.003), which was also underscored by significantly increased CC-genotype frequencies across BMI categories (10.4% to 12.5%, p-value for trend = 0.0002). We did not find evidence for differential ORs (c) among studies with higher than average obesity prevalence compared to lower, (d) among studies with BMI assessment after the year 2000 compared to those before, or (e) among studies from older populations compared to younger. Analysis of non-Caucasian adults (n = 4889) or children (n = 3243) yielded ORs of 1.01 (p-value = 0.94) or 1.15 (p-value = 0.22), respectively. There was no evidence for overall association of the rs7566605 polymorphism with obesity. Our data suggested an association with extreme degrees of obesity, and consequently heterogeneous effects from different study designs may mask an underlying association when unaccounted for. The importance of study design might be under-recognized in gene discovery and association replication so far.
Author Summary
A polymorphism of the INSIG2 gene was identified as being associated with obesity in one of the first genome-wide association studies. However, this association has since then been highly debated upon inconsistent subsequent reports. We collected association information from 34 studies including a total of 74,000 participants. In a meta-analysis of the 27 studies including 66,000 Caucasian adults, we found no overall association of this polymorphism rs7566605 with obesity, comparing subjects with a body-mass-index (BMI)≥30 kg/m2 with normal BMI subjects (BMI<30 kg/m2). Our data suggested an association of this polymorphism with extreme obesity (e.g., BMI≥37.5 kg/m2) compared to normal controls. Such an association with extreme obesity might induce heterogeneous effects from different study designs depending on the proportion of extreme obesity included by the design. However, further studies would be required to substantiate this finding. The importance of study design might be under-recognized in gene discovery and association replication so far.
Citation: Heid IM, Huth C, Loos RJF, Kronenberg F, Adamkova V, Anand SS, et al. (2009) Meta-Analysis of the INSIG2 Association with Obesity Including 74,345 Individuals: Does Heterogeneity of Estimates Relate to Study Design? PLoS Genet 5(10): e1000694. https://doi.org/10.1371/journal.pgen.1000694
Editor: David B. Allison, University of Alabama at Birmingham, United States of America
Received: December 9, 2008; Accepted: September 22, 2009; Published: October 23, 2009
Copyright: © 2009 Heid et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Funding: This work was funded by the NIH subcontract from the Children's Hospital, Boston, Massachusetts, United States, (HEW, IMH, prime grant 1 R01 DK075787-01A1 to JNH), the German National Genome Research Net NGFN2 and NGFNplus (HEW 01GS0823, S. Schreiber, JH, AH), by the Munich Center of Health Sciences (HEW), the DFG excellence cluster “Inflammation at Interfaces” (S. Schreiber), the “Genomics of Lipid-associated Disorders” GOLD of the “Austrian Genome Research Programme GEN-AU” (FK), the Deutsche Forschungsgemeinschaft (HE1446/4-1,4-2, JH, AH), the European Union (FP6 LSHMCT-2003-503041, JH), the EU (Vasoplus-037254, MC) and MIUR (RBIN064YAT, MC), the British Heart Foundation (PG2005/015, SEH, JAC), the PIONEER WP2 (HB), by NIH (HL-045670) to the Heritage Family Study to CB and TR, by NIH grant DK078150 (KLM), Unilever Corporate Research, UK (SL), the Danish Medical Research Council (PB), the Commission for Scientific Research in Greenland (PB), the NHLBI grant 5R01HL087679-02 through the STAMPEED program (MRJ), the MRC of the UK (MRJ), ENGAGE project (MRJ, HEW), the grant agreement HEALTH-F4-2007-201413 (MRJ), the Academy of Finland (MRJ); Biocenter Oulu, University of Oulu, Finland (MRJ), the German Federal Ministry of Education and Research (BMBF, FKZ 0313438A, MRH) and the BioProfile-Program (MRH), and by project N.00023001 (IKEM, CR, JAH), 1M0510 (MSMT, CR, JAH), and grant PI061326 (DC). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Competing interests: Dawn Waterworth and Vincent Moser are employers of GSK. Gudmar Thorleifsson is employer and shareholder of deCODE.
Introduction
One of the first genome-wide association (GWA) studies ever and the first on obesity identified the INSIG2 gene represented by the rs7566605 polymorphism as a novel gene for common obesity [1]. Functional evidence depicted the INSIG2 gene from the very start as an interesting candidate for obesity as being involved in the reversed cholesterol transport by an interaction with sterol regulatory element-binding proteins (SREBPs) [2], which are transcription factors that activate the synthesis of cholesterol and fatty acids in the liver and other organs [3].
The observed SNP-obesity-association was replicated in some, but not in all studies [4]–[11]. A letter to Science by the authors of the initial report in response to the emerging debate of the early inconsistent results [1] raised the question of whether the association might be more pronounced in studies that were not ascertained for reasons related to better health status, when comparing more severely obese subjects with normal controls, in populations with a higher prevalence of obesity or in populations with a higher mean age. The need for a meta-analysis was stated there for the first time and re-stated by Lyon and colleagues [12]. Furthermore, a secular trend for increasing prevalence of obesity was observed in two large population-based studies from the same geographical region using the same protocols but one recruited 1994/95 (KORA-S3) and the other 1999–2001 (KORA-S4) [13]. The later study showed a stronger INSIG2-obesity-association compared to the earlier study: This raised the additional question whether the changes in nutritional intake and physical activity [14],[15] believed to contribute to the increase in the prevalence of obesity during the last decades were the reason for some of the between-study heterogeneity observed for this SNP's association with obesity.
The inconsistent reported associations and the many resulting debates motivated us to undertake a systematic meta-analysis of all available data to investigate potential causes of heterogeneity and to look for consistent results among subgroups. It was thus the specific aim of this meta-analysis to explore five hypotheses for heterogeneity of the rs7566605 association with obesity: (Hypothesis 1) The association depends on study design. Therefore, we classified studies as general population-based (GP) when they were neither selected for any disease nor for not having any disease, as any selection of this type was shown to potentially induce bias for outcomes associated with the disease [16]. We classified studies as ‘healthy population’ (HP) when they were selected for reasons related to a better health status (i.e. studies including subjects from working populations or studies excluding subjects for with diseases such as diagnosed type 2 diabetes), or obesity studies (OB) when they were specifically designed to investigate obesity, usually case-control or family studies. We did not include studies that were ascertained for any disease to reduce overly complexity. (Hypothesis 2) The association is more pronounced when comparing more extreme cases of obesity with normal or lean subjects, or (Hypothesis 3) among studies with a greater percentage of obese individuals. (Hypothesis 4) The association is differentially seen in studies including subjects with a higher age compared to studies based on younger populations, or (Hypothesis 5) more pronounced in studies with a more recent assessment of BMI (after year 2000) assuming that these studies would reflect the changes in dietary habits and physical activity of the last decade and assuming that subjects with the INSIG2 risk genotype are more prone to gain weight in such an environment.
Results
Data Collected
We have gathered data on 34 studies from across Europe, North America, and Asia that met the inclusion criteria including a total of 74,345 subjects. All studies were categorized a priori according to their study design (GP, HP, OB), ethnicity, and whether it was an adult or children population (Tables S1 and S2). A more detailed description can be found in the original study publications [1], .
Main Analysis
The main results are summarized in Table 1: The meta-analysis of 27 studies of Caucasian adults (n = 66,213) showed a fixed effect odds ratio (OR) of 1.076 (p-value = 0.023) and a random effects OR of 1.051 (p-value = 0.268) with the I2 measure indicating significant between-study heterogeneity (I2 = 41.0%, 95% confidence interval, CI = [6.6%, 62.8%], Q-test p-value = 0.015).
Some Heterogeneity Might Relate to Study Type
The I2 measure declined (I2 = 10.9%, 95% CI = [0.0%, 48.1%], Q-test p-value = 0.329) by restricting to the 16 GP studies, including 48,844 subjects, yielding a fixed [random] effects OR of 1.097 [1.092] (p-value = 0.015 [0.035]). The OR estimates were similar when excluding early published studies (p = 0.054 [0.060]).
The I2 measure for heterogeneity was zero among the five HP studies, including 7640 subjects, and combined estimates yielded a tendency towards a protective OR of 0.796 (p-value = 0.028) without remarkable change when excluding the early published studies.
The OR among the six OB studies, including 9729 subjects, of 1.152 using the random effect model was higher than the one for the GP studies, but not statistically significantly different from unity (p-value = 0.253). There was substantial heterogeneity among the OB studies (I2 = 63.2%, Q-test p-value = 0.018). The OR estimates were similar when excluding the early published studies.
Figure 1A–1C shows forest plots of the Caucasian adult studies with combined estimates by study type. The p-value testing for difference between the GP and the HP combined estimates was 0.004 [0.012 when corrected for pair-wise testing of three subgroups] and 0.039 [0.089] when excluding the early published studies. Thus, there is some, but not completely conclusive evidence for Hypothesis 1 that study design might explain some of the between-study heterogeneity of this genetic association.
Association with obesity (BMI ≥ 30 kg/m2) for (A) the Caucasian adult general population-based (GP) studies, (B) the Caucasian adult studies ascertained for reasons related to health status (HP), (C) the Caucasian adult obesity case-control studies (OB), (D) the non-Caucasian adult studies, and (E) the pediatric studies. Shown are recessive model OR estimates comparing the CC genotype versus CG or GG for each study and pooled estimates. The fixed effect (FE) model OR is shown in case of no significant heterogeneity as tested by the Q-statistics; a random effect (RE) model is shown otherwise.
Studies in Non-Caucasian Adults or Children
In the pooled analysis of the four studies on non-Caucasian adults (n = 4889), we found no significant association of the CC genotype with obesity. The pooled analysis of the three pediatric studies (n = 3243) was also not significant (Table 1, Figure 1D and 1E).
Increasing Strength of Association in More Extreme Comparisons
Our data suggested an association with increased ORs among the Caucasian adults when more extremely obese subjects were compared to lean controls (Table S3; Hypothesis 2): combining over all studies, the ORs gradually increased from 1.156 to 1.183, 1.221, or 1.265 (p-values ranging from 0.001 to 0.003) when moving the BMI cut-off for the obese cases from 32.5 to 35.0, 37.5 or 40.0 kg/m2, respectively, and comparing to controls with BMI<25 kg/m2. A similar trend for increasing ORs was seen when comparing extremely obese subjects against controls with BMI<30 kg/m2 or BMI<20.0 kg/m2. Among the GP studies, the ORs increased from 1.198 to 1.257, 1.313, or 1.414 (p-values ranging from 0.001 to 0.003), respectively. The analogous comparison for HP studies revealed that the protective influence of the CC homozygous was reversed in the more extreme comparisons with ORs from 0.856 to 0.959, 1.139, or 1.604. For the OB studies, the ORs of the analogous comparisons were well above unity for all comparisons, but did not show a trend.
As summarized in Table 2, the accompanying trend analyses of the CC genotype frequencies across the various BMI categories indicated significantly increased CC genotype frequencies from 10.4% to 12.5% (p-value testing for trend = 0.0002), which persisted when excluding the early published studies (p-value = 0.0008). A similar trend was seen among GP studies.
In both types of analyses, the varying cut-point ORs as well as the trend in genotype frequencies by BMI categories, suggest an association of the rs7566605 with extreme obesity compared to normal controls (Hypothesis 2).
Further Hypotheses on Potential Sources of Heterogeneity
Table 3 summarizes the results of the further three hypotheses to explain heterogeneity, which were tested for the Caucasian adult studies. Hypothesis 3: there was some tendency towards higher ORs among ‘more obese’ study populations compared to the ‘less obese’ study populations (p-value = 0.052 [0.285] testing for difference of the fixed [random] effects ORs), but not statistically significant. Hypothesis 4: there was no evidence for any difference between studies from older populations (i.e. mean age of subjects above 50 years) as compared to studies from younger populations (i.e. mean age below 50 years). Hypothesis 5: there was a tendency towards more pronounced ORs for the studies with BMI assessed after the year 2000 as compared to studies with BMI assessed before 2000 (p-value = 0.007 [0.095]), but not statistically significant given the various tests performed and particularly not when excluding the early published studies (p-value = 0.086 [0.248]). Hypotheses 3–5 were not tested in the HP or OB stratified analyses as too few (3–6) studies were available.
Sensitivity Analyses
The sensitivity analyses (Table S4) indicated robustness of estimates towards selection of gender or age and no significant difference between published and unpublished studies. Excluding the two studies with self-reported BMI from the overall GP meta-analysis resulted in a slight increase of the OR estimate.
Genetic Model
We specifically examined the association under the recessive genetic model as suggested by the original paper [1]. Our data on the raw numbers of obese or non-obese subjects with one of the three genotypes underscored a recessive model in the Caucasian adult studies combined (ORCCversusGG = 1.112 [1.029, 1.203], p-value = 0.007, and ORGCversusGG = 0.988 [0.940, 1.037], p-value = 0.618) as well as among the GP studies (ORCCversusGG = 1.076 [0.976, 1.185], p-value = 0.142, and ORGCversusGG = 0.995 [0.956, 1.036], p-value = 0.813).
Discussion
We conducted a systematic meta-analysis on published and unpublished studies by collecting summary statistics on the association of the rs7566605 SNP near the INSIG2 gene using a recessive genetic model as proposed by Herbert and colleagues. This SNP was highly debated and the inconsistent findings were very much puzzling underscored by again inconclusive findings in two recent publications [21],[22]. To solve this puzzle, we collected aggregated study-specific data from 34 studies with a total of 74,345 subjects analyzed according to a standardized model.
The main analysis did not support evidence for an overall association with obesity of the CC-genotype compared to the CG/GG (OR = 1.05, p-value = 0.268). Our data suggested an association for more extreme obese subjects (BMI≥32.5, 35.0, 37.5, 40.0 kg/m2) compared to normal controls (BMI<25 kg/m2) with ORs increasing to 1.16, 1.18, 1.22, 1.27 (p-values between 0.001 and 0.003) and significantly increased CC-genotype frequencies with increasingly high BMI categories (10.4% to 12.5%, p-value for trend = 0.0002).
The main analysis pointed towards significant between-study heterogeneity with an I2 measure of 41%. When we restricted the analysis to GP studies, the I2 declined to 11% and the OR increased to 1.10. This is in-line with a very recently published study, which found the OR to increase from 1.02 for a combined analysis of diverse types of studies including 16,781 subjects to an OR of 1.15 when restricting to the general population-based INTER99 cohort including 6,158 subjects [21]. This was the largest GP study on this SNP-association prior to this meta-analysis.
The Degree of Obesity and the Study Design as a Potential Source of Heterogeneity
The results of our analyses suggest an association of this SNP with extremely obese subjects compared to normal controls, but future research will need to confirm this finding. Study design can impact how many extremely obese subjects are included in the study. Study designs that sample more extremely obese subjects will have greater power to detect the association, while study designs that sample fewer of these subjects will have little power to detect the association. An association with extreme obesity might well be masked by study design, and meta-analyses which disregard study design differences.
The tendency of higher OR estimates observed in the general population-based studies (GP) and the obesity case-control studies compared to ‘healthy population’ (HP) studies could possibly reflect the association for extreme obesity compared to normal controls. We have classified studies as ‘ascertained for criteria related to a better health status’ (‘HP’) when patient groups were excluded or when the sample was ascertained based on working populations, which are known to be usually more healthy. We have performed this classification blinded for the study estimate to exclude bias from informative misclassification. It could be that the common rs7566605 directly or via tagging another possibly rare and quite penetrant variant does not so much alter BMI throughout the distribution, but really puts participants into the very obese category. Thus an effect is picked up in the GP samples, but not in the HP studies with fewer extremely obese persons. This would also be in-line with (i) our more pronounced findings in the studies with a higher percentage of obese subjects, and (ii) the lack of association in the quantitative BMI-analysis, which tests for a shift in the full BMI distribution.
It could also be hypothesized that the between-study heterogeneity is due to an interaction of the gene with the environment of high fat diet: INSIG2 is regulated by atherogenic diet and oxidized oil in rodents [23],[24] and such a diet relates to higher obesity status. A gene-environment interaction was also suggested by reports that life-style interventions including physical training have less positive effects in CC genotype carriers than in CG/GG subjects [25]–[27]. A person at the brink of getting obese might either comply to exercise and avoid becoming obese or might give up and end in the extreme obesity category. This would be in-line with our pronounced findings for more extreme degrees of obesity. It might also be speculated that our more pronounced association among studies with BMI assessment after the year 2000 compared to before 2000 reflects this gene-environment interaction as well: assuming that a change in nutritional habits and physical activity contributed to the increase in obesity observed in the last decades, the studies with a more recent BMI assessment might reflect this more “modern” environment and the INSIG2-obesity association would emerge here more clearly.
Also, unknown epistatic interaction of the rs7566605 with one or other (rare) polymorphisms could lead to association with the more extreme obesity phenotype, with the INSIG2 gene being part of a complex that functions as a biological entity (SREBP, SCAP, INSIG2).
The importance of ascertainment of the study sample might be under-recognized so far. Monsees and colleagues [16] have illustrated that ascertaining for or against disease would induce a bias in genetic association estimates when the genetic marker as well as the phenotype under study (here obesity) are associated with the disease. As obesity is associated with many chronic diseases such as type 2 diabetes and cardiovascular disease, exclusion of such study participants opens up for bias, if association of the SNP with the disease cannot be precluded. We had specifically excluded studies ascertained for disease and had also planned on separating HP from GP studies ahead of the analyses. We would like to highlight that we have adopted a very strict definition of GP and that there might be special advantages in using either disease-ascertained studies [28] or particularly healthy samples in other instances [29].
Strengths and Limitations of This Study
This meta-analysis has several strengths: (1) We have conducted a systematic approach by collecting all studies published before January 1, 2008, including seven studies that were unpublished at that time. (2) The meta-analysis is large including a total of 74,365 subjects. (3) We separated working tasks, with one researcher designing the analysis plan, recruiting studies, classifying studies by study type, and deciding upon compliance to inclusion criteria, while the other cared for the incoming data and performed the analysis. Therefore, design decisions were made in a blinded way, which guarded against subtle post-hoc data-driven analysis decisions, study selection bias, and informative misclassification of study design. (4) We collected data according to a strict protocol including standardized analysis from each study partner, with strong quality control of study-specific results. (5) We performed only a limited number of pre-defined subgroup analyses with some amendment during the review process. (6) We had a strong focus on the diversity of study design, which is unique in genetic epidemiological research at the time being and an issue probably under-recognized so far.
It might be considered a disadvantage that we did not include studies with subjects selected for diseases, particularly those associated with type 2 diabetes and thus a higher prevalence of obesity, as the association might be stronger in such studies. This might have been one reason for the initial investigation by Herbert and colleagues to detect this association, as mostly type 2 diabetes or asthma ascertained samples had been used. However, we excluded these samples by design in order to reduce heterogeneity and to reduce the influence of counter-regulating disease processes or medications. Furthermore, publication bias is always a threat for meta-analyses as the extent and direction of this selection cannot fully be determined; we attempted to guard against this by recruiting also unpublished studies. It might be considered a further disadvantage that our hypotheses were motivated by the early published studies, which are included in this meta-analysis; to accommodate for this fact, we repeated all analyses excluding these studies (see Text S1D). Finally, it might be considered a disadvantage that we were not able to recruit enough non-Caucasian adult or children studies for a conclusive comparison with the Caucasian adult studies.
Conclusions
This pooled analysis including all study designs does not provide evidence for overall association of the INSIG2 rs7566605 CC genotype with increased risk of obesity compared to the CG or GG genotypes. Our data suggest an association with extreme degrees of obesity and consequently heterogeneous effects from different study designs may mask an underlying association when unaccounted for. The importance of study design might be under-recognized in gene discovery and association replication so far.
Materials and Methods
Meta-Analysis Concept
We designed our meta-analysis as a pooled analysis of study-specific association estimates according to a standardized protocol (see ‘data form’, Text S1B, and pre-defined analysis plan, Text S1C) with an amendment added during the review process (Text S1D).
Our eligibility criteria for studies were (i) data available on BMI, the INSIG2 rs7566605 SNP genotypes, age and sex, (ii) sample size of at least 200 subjects, (iii) ethical approval, and (iv) either general population-based (GP), ascertained for reasons related to a better health status such as studies including only subjects in the work-force or studies excluding subjects with diseases (‘healthy population’, HP), or designed specifically to study obesity such as obesity case-control or obesity family studies (OB). We excluded all studies selecting subjects for any disease. For more information on the classification of studies by study type, see Text S1E. We did not exclude on any age or ethnicity criteria to allow exploration of potential heterogeneity. We controlled for study selection bias by separating the two main tasks between the two first authors: IMH. took care of study recruitment, compliance to inclusion criteria, and classification of studies by study type, and CH performed quality control and statistical analysis.
Study Recruitment, Collection of Aggregated Data, and Quality Control
We identified all eligible studies published before January 1, 2008 by a systematic PubMed literature search using the search terms ‘INSIG2’ OR ‘INSIG-2’ OR ‘rs7566605’. Additionally we identified unpublished studies through contacting researchers in the field by making a call for this meta-analysis in several consortia (GIANT, KORA-500K, IL-6-consortium), in the letter to Science by Herbert and colleagues [1], in the paper by Lyon and colleagues [12], and in meeting presentations. We sent out and collected standardized data forms, and verified all entries for within-plausibility as well as consistency with publications, if available. We made plausibility checks by use of double information in the aggregated data. All study-specific ambiguities were clarified with the respective study investigators.
All involved studies were conducted according to the principles expressed in the Declaration of Helsinki. The studies were approved by the local Review Boards. All study participants provided written informed consent for the collection of samples and subsequent analysis.
Statistical Analysis
For each study, OR estimates comparing the odds of obesity (BMI≥30 kg/m2) for subjects with the minor-allele homozygous genotype (CC) with subjects of the other genotypes combined (CG, GG), thus assuming a recessive model, were calculated using logistic regression adjusting for age and sex. We also collected OR estimates with standard errors (SE) for the odds of more extreme degrees of obesity (i.e. subjects with BMI≥32.5, 35.0, 37.5, or 40.0 kg/m2) compared to various degrees of leanness (i.e. subjects with BMI<30, 25, or 20 kg/m2). Furthermore, we collected summary statistics (mean and SE) on the difference in mean BMI between subjects with the CC genotype compared to subjects with the CG or GG genotypes using linear regression adjusted for age and sex. For each study, analyses stratified for sex or age (with a cut-off at 50 years) were performed as well. Among the six studies from non-Caucasian populations, two studies had too few (<3) subjects among the obese with the CC genotype to be included into the dichotomous obesity analysis, while they were included for the quantitative BMI analysis.
For the meta-analysis, we combined beta-estimates among Caucasian adult studies (All-CA) followed by a stratified analysis by study type (GP, HP, OB) and combined estimates among non-Caucasian (All-NC) or children studies (All-CH), see ‘amendment to analysis plan’, Text S1D.
The following was only performed on Caucasian adults as the number of available non-Caucasians or children was too low. We tested for differential association between the GP, HP, or OB studies applying a t-test on the combined beta-estimates and correcting p-values for testing three subgroups. We tested for a trend in CC genotype frequencies across the different BMI categories and tested for differential associations separating the studies for higher or lower obesity prevalence, higher or lower mean age of study subjects, or for a more or less recent BMI assessment using a t-test on the combined beta-estimates. This was complemented by sensitivity analyses stratifying on sex, age, publication status, and type of BMI assessment. As the hypotheses were motivated by the early published studies mentioned in the letter to Science by Herbert and colleagues [1], we repeated all analyses with exclusion of these hypotheses-generating studies.
In all analyses, between-study heterogeneity was tested by the χ2-based Q-statistic and quantified by I2 as a measure of the proportion of variance between the study-specific estimates that is attributable to between-study difference rather than random variation. We pooled study-specific estimates according to the inverse-variance weighted fixed effect or the DerSimonian and Laird random effects model [30]. Heterogeneity was considered to be significant at the 10% level. All statistical analyses were performed with SAS (statistical analysis software, SAS institute, Inc.). Forest plots were prepared using Review Manager software (Cochrane Collaboration, Copenhagen, DK).
Supporting Information
Figure S1.
Forest plot on estimates of the INSIG2 rs7566605 association with BMI. Association of the INSIG2 SNP with BMI for (A) the Caucasian adult general-population based studies (GP), (B) the Caucasian adult studies selected for healthy population (HP), (C) the Non-Caucasian adult studies, (D) the pediatric studies. Shown are recessive model beta estimates comparing the CC genotype versus CG or GG for each study and pooled estimates. The fixed effect (FE) model beta is shown in case of no significant heterogeneity as tested by the Q-statistics; a random effect (RE) model is shown otherwise.
https://doi.org/10.1371/journal.pgen.1000694.s001
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Table S1.
Characterization of eligible and recruited studies.
https://doi.org/10.1371/journal.pgen.1000694.s002
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Table S2.
More details on study characteristics.
https://doi.org/10.1371/journal.pgen.1000694.s003
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Table S3.
Stronger genetic effects when comparing more extreme degrees of obesity as an explanation of the heterogeneity of the INSIG2 rs7566605 association (Hypothesis 2). Pooled association estimates for increasing degrees of obesity for all Caucasian adult studies combined (All-CA) as well as stratified by study type (GP = general population, HP = healthy population, OB = obesity study), for all Non-Caucasian studies (All-NC), but not for children studies due to non-comparability of BMI categories. Numbers stated are ORs comparing cases versus controls (p-values) from the pooled analysis (fixed and random effects), number of cases/controls (number of pooled studies), and the I2 (p-value from Q statistics).
https://doi.org/10.1371/journal.pgen.1000694.s004
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Table S4.
Sensitivity analyses for the association of the INSIG2 SNP with obesity regarding sex, age, published or unpublished status of studies, self-reported or measured BMI. Stated values are ORs (p-values) based on fixed or random effects models, the I2 (p-value of Q test) for each group, and p-values testing for difference between the fixed effect [random effect] ORs of the two corresponding groups. (Not for HP, OB, All-NC, or All-CH due to low numbers of studies.)
https://doi.org/10.1371/journal.pgen.1000694.s005
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Table S5.
Main results of pooled association of the INSIG2 SNP with body-mass-index (BMI). The analyses for all Caucasian adult studies combined (All-CA) as well as stratified by study type (GP = general population, HP = healthy population, OB = obesity study), for all Non-Caucasian studies (All-NC), and for the children studies (All-CH) indicated some difference between GP and HP studies (Hypothesis 1). Numbers stated are recessive model beta-estimates (p-values), i.e., mean difference of BMI between subjects with the CC genotype compared to subjects with the CG or GG genotype, using fixed or random effects models, the I2 (p-value of Q-statistics), and p-values testing for pair-wise difference between GP, HP, or OB studies.
https://doi.org/10.1371/journal.pgen.1000694.s006
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Table S6.
Exploring potential sources of heterogeneity of the INSIG2 rs7566605 association with BMI (Hypotheses 3–5). Stated values are pooled beta-estimates (p-values) based on fixed or random effects model, I2 (p-values of Q-test) for each group, and p-values testing for difference between the beta-estimates of the two corresponding groups. (Not for HP, NC, or CH due to low numbers of studies.)
https://doi.org/10.1371/journal.pgen.1000694.s007
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Table S7.
Sensitivity analyses for the association of the INSIG2 SNP with BMI regarding sex, age, published status, or self-reported or measured BMI. Stated values are beta-estimates (p-values) based on fixed and random effects models, I2 (p-value of Q test) for each group, and p-values testing for difference between the beta-estimates of the two groups. (Not for HP, All-NC, or All-CH due to low numbers of studies.)
https://doi.org/10.1371/journal.pgen.1000694.s008
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Text S1.
References of included published studies; data form sent to each study partner; predefined analysis plan; amendment to analysis plan; and classification of studies due by study type.
https://doi.org/10.1371/journal.pgen.1000694.s009
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Acknowledgments
We thank all study participants in the many cohorts of this work for enabling this type of research by their participation. We would like to acknowledge the Indian Genome Variation Consortium and the KORA (Cooperative Health Research in the Region of Augsburg) group. We also would like to thank Julia Müller, Andrew J. P. Smith, Jeannine Sauber, Sabine Jyrch, Ron Do, Alexandre Belisle, Alexandre Montpetit, F. Horber, N. Potoczna, W. Terhalle, Eun-Kyung Suk, and the many people who contributed to the individual studies.
Author Contributions
Conceived and designed the experiments: IMH CH. Performed the experiments: IMH CH. Analyzed the data: IMH CH RJFL VA SSA KA HB PB HB CB MC JAC DC CD JCE EF FF PF JH RAH AH MRH FBH JAH SEH SCH TI MRJ MK BK HK JK LAL BL SL HNL DM KLM VM AN TTN BP LP LQ TR DR SS SS RS AS GT UT HV KSV NJW DMW SY CL MIM CL JNH NL HEW. Contributed reagents/materials/analysis tools: IMH CH RJFL FK VA SSA KA HB PB HB CB MC JAC DC CD JCE EF FF PF JH RAH AH MRH FBH JAH SEH SCH TI MRJ MK BK HK JK LAL BL SL HNL DM KLM VM AN TTN BP LP LQ TR DR SS SS RS AS GT UT HV KSV NJW DMW SY CL MIM CL JNH NL HEW. Wrote the paper: IMH CH AL NL. Advised with paper writing: RJFL. Advised in design and paper writing: FK. Consulted in the revision: AL. Advised in study design: CL. Motivated the project and consulted in study design: HEW.
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