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Accelerating the Gillespie τ-Leaping Method Using Graphics Processing Units

Figure 1

Output comparison with StochKit for accuracy.

A random synthetic network with was used. Two species, namely, were tracked and compared with StochKit output. Figure 1a shows the comparison of means. Figure 1b shows the comparison of standard deviations. Figure 1c shows the residuals between StochKit outputs and GPU outputs. The maximum deviation on the means is about 0.16%. The maximum deviation on standard deviations is about 4%.

Figure 1

doi: https://doi.org/10.1371/journal.pone.0037370.g001