Genes Expressed in Grapevine Leaves Reveal Latent Wood Infection by the Fungal Pathogen Neofusicoccum parvum
Fig 4
RNA-Seq revealed transcriptional differences in leaves of the four treatment-time combinations.
(A) Per-base quality score plot shows the average Phred+33 score of all 12 samples. Error bars represent standard deviations. (B) Scatter plot showing differential expression for the contrast IW vs. NIW at 10% FDR. Red-coloured dots represent DEGs. Those positioned farthest from the x-axis, at the upper and lower plot borders, have very large to infinite log2-fold changes. (C) Heatmap showing Euclidean distances among the 12 libraries, calculated from Variance stabilized transformed (VST) count data. Colour key indicates level of similarity between libraries. (D) Principal Component Analysis (PCA) of the first two principal components (PC1, PC2).
