Consistency Analysis of Genome-Scale Models of Bacterial Metabolism: A Metamodel Approach
Fig 4
Relation between the pathways: methanogeneis from CO2 and the so-called formaldehyde oxidation V (H4MPT).
Black colored reactions were removed from metamodel because they belong exclusively to the methanogenic pathway. The white colored reaction is involved in the metanogenesis but also in the formaldehyde oxidation V (H4MPT) pathway. Grey reactions belonging to the formaldehyde oxidation V (H4MPT) pathway and were manually added to the metamodel to gap-fill the former pathway. Metabolite abbreviations can be found in S3C Table.
